PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33272
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family DBB
Protein Properties Length: 197aa    MW: 21789.4 Da    PI: 6.2894
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33272genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.2e-08442537
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                C+ +e+ e+++fC +++  lC+ C  ++H+       H
  Tp57577_TGAC_v2_mRNA33272  4 QCDVCEKAEASIFCPSDEAALCNGCDHTIHHAnklatkH 42
                               7****************************7443555555 PP
2zf-B_box26.41.4e-085592338
                   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                                + C+ ++e +  lfC++++  lC++C l +H+   Ht
  Tp57577_TGAC_v2_mRNA33272 55 YPLCDICQERRGYLFCQEDRAILCRECDLPIHRAneHT 92
                               689*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.419147IPR000315B-box-type zinc finger
CDDcd000212.81E-4347No hitNo description
PfamPF006432.8E-5443IPR000315B-box-type zinc finger
SMARTSM003362.9E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.95453100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1353100IPR000315B-box-type zinc finger
PfamPF006432.5E-75492IPR000315B-box-type zinc finger
CDDcd000215.06E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKIQCDVCEK AEASIFCPSD EAALCNGCDH TIHHANKLAT KHARFPLVHL NSKDYPLCDI  60
CQERRGYLFC QEDRAILCRE CDLPIHRANE HTQKHNRFLL SGVKLSNNSL DLDSSSTSIG  120
SETRNYSNRS SKANIIPRSV SNENVSSSCK VEDNMASDTG SVSTSSISEY LIETIPGYCF  180
EDFLNASFPP NGFCKV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439601e-176GU443960.1 Trifolium repens clone BAC 32k23 kinesin-related protein, salt tolerance-like protein, and dehydrin b genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603989.11e-126B-box zinc finger protein 20 isoform X1
SwissprotQ9LQZ74e-60BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A2K3N0E11e-141A0A2K3N0E1_TRIPR; Putative salt tolerance-like protein (Fragment)
STRINGAES742401e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-57salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]