PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA32952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 149aa MW: 17138 Da PI: 10.517 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 55.7 | 1.1e-17 | 26 | 73 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +rWt+eLHe+F+ v++ G +ekA Pk+il++mk + ++l+h kSHLQ Tp57577_TGAC_v2_mRNA32952 26 IRWTEELHESFMMIVDHVGCPEKAKPKAILDMMKSNLISLSHGKSHLQ 73 79********************************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.17E-8 | 22 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-14 | 23 | 74 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 25 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:3.60.40.10 | 3.1E-4 | 85 | 141 | IPR001932 | PPM-type phosphatase domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MYIQAHIQRV TSNNAFRKAL TCKRWIRWTE ELHESFMMIV DHVGCPEKAK PKAILDMMKS 60 NLISLSHGKS HLQVKLFKFN LNNFNEPEVY SRLLKDTDRF IIWKLISNED AAKVVNSNTS 120 PRDRIAKRLA TLALEKGADK RGKDIVTL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32952 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | AES81461 | 2e-30 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14490 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04450.2 | 6e-12 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA32952 |