PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32921
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19783.7 Da    PI: 5.2258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32921genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-1226601246
                               HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                     SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                fskR+ g++ K  ELS+LC a+ a+i+ ss++ l
  Tp57577_TGAC_v2_mRNA32921 26 DFSKRKLGLFNKVTELSILCKAKTALIVRSSNNDL 60
                               59******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-131178IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-51466IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.9652367IPR002100Transcription factor, MADS-box
PfamPF003197.2E-112460IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAFEGNNAAK KENTRKRRID EIKKADFSKR KLGLFNKVTE LSILCKAKTA LIVRSSNNDL  60
DACGYPNCDA VVQQFLTGKV ITEDYDKKKK EEVVEIQRLE YETIVDKLME LKEEEKNLEA  120
INDEAEKSGY GIPDWWNGSI DDMSLESLEE FKSSLQKLKL NLRLNLDAKK LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189143.15e-52agamous-like MADS-box protein AGL62
TrEMBLA0A2K3L5B96e-87A0A2K3L5B9_TRIPR; Agamous-like mads-box protein agl62-like (Fragment)
STRINGXP_004497957.12e-51(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.15e-10AGAMOUS-like 91