PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G66656.1 | ||||||||
Common Name | AGL91, T8E24.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20374 Da PI: 7.389 | ||||||||
Description | AGAMOUS-like 91 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.9e-19 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y + AT3G66656.1 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 57 6788899*********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.105 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009089 | anatomy | endosperm |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGRRKIKMEK VQDTNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYSFGKP 60 NFDVIAERFK NEFEEEEEGD SCETSGYSRG NRARQEKKIC KRLNSITEEA EAEKKHGEDL 120 HKWLESAEQD KFNKPIEELT LEELKEFEAK IKKISCGIQS NISHMQASSS LMFLSNDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 6e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 6e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 6e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 7e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 7e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 7e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 7e-16 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 256247_at | 0.0 | ||||
Expression Atlas | AT3G66656 | - | ||||
AtGenExpress | AT3G66656 | - | ||||
ATTED-II | AT3G66656 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G66656.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G66656 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC036106 | 0.0 | AC036106.6 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056634 | 0.0 | DQ056634.1 Arabidopsis thaliana MADS-box family protein (At3g66656) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187320.1 | 1e-128 | AGAMOUS-like 91 | ||||
Swissprot | O64703 | 6e-63 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A384L204 | 1e-127 | A0A384L204_ARATH; AGL91 | ||||
TrEMBL | Q9C836 | 1e-127 | Q9C836_ARATH; AGAMOUS-like 91 | ||||
STRING | AT3G66656.1 | 1e-128 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT3G66656.1 |
Entrez Gene | 819848 |
iHOP | AT3G66656 |
wikigenes | AT3G66656 |