PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32776
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 554aa    MW: 60449.7 Da    PI: 7.8541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32776genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32213270260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Tp57577_TGAC_v2_mRNA32776 213 NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 270
                                8****************************************.***************85 PP
2WRKY106.31.6e-33376434159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA32776 376 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 434
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26206271IPR003657WRKY domain
SuperFamilySSF1182901.57E-24211271IPR003657WRKY domain
SMARTSM007741.2E-33212270IPR003657WRKY domain
PfamPF031062.0E-24213269IPR003657WRKY domain
PROSITE profilePS5081122.492213271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-38361436IPR003657WRKY domain
SuperFamilySSF1182901.44E-29368436IPR003657WRKY domain
PROSITE profilePS5081138.825371436IPR003657WRKY domain
SMARTSM007743.1E-39376435IPR003657WRKY domain
PfamPF031063.3E-26377434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDTATTTNSG EPHCSSELRL DGAPNDPNRT GSGQNSMARY KLMSPAKLPI SRSPCITIPP  60
GYSPTSFLES PVLLSNMKVE PSPTTGSLLQ ALHCSMTSAG SPTFPVTSTC FNTSTVNGRK  120
YSFFEFKPPA RNMVPADFNN HVSEQSTQVE GQGKGQSFLS SPLNENEKAD QSNELSLSSP  180
VQMVSSVANS PVDVNSDEHN HKGNTANGPQ SSNDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPSNRYSAG SIMSTQGERS DNRASSLAGR  300
DDKVSNSPEQ PTVATNDLSL EGAGFVSTKT NDEVDDDDLF SKRRKTELGN TDIIPVVKPI  360
REPRVVVQTM SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP  420
KAVITTYEGK HNHDVPAAKN SSHDMAGYAA SKIKLEESDT ISLDLGMGIT SAAENRSNGQ  480
GKMLLSEFGN NSQTHTSNSN FKFVHTTTGP VYYGVLTNGS NPFGSRENRN DGSSINHSSY  540
PYSQNMGRIL MGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37213437878Probable WRKY transcription factor 4
2lex_A1e-37213437878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32776
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370791e-175AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617695.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2K3PM830.0A0A2K3PM83_TRIPR; WRKY transcription factor
STRINGAET006540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein