PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32397
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 273aa    MW: 31368.3 Da    PI: 9.728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32397genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-194185147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Tp57577_TGAC_v2_mRNA32397 41 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHVV 85
                               679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-92448IPR009057Homeodomain-like
SuperFamilySSF466891.41E-222491IPR009057Homeodomain-like
PROSITE profilePS5129428.7693690IPR017930Myb domain
SMARTSM007171.4E-164088IPR001005SANT/Myb domain
PfamPF002494.4E-164184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-184984IPR009057Homeodomain-like
CDDcd001678.90E-85286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
LDNQYFSSCI YKKINIIFFY LFEGKSCRLR WFNQLDPRIN RRPFTEEEEE RLLAAHRIHG  60
NKWALIARLF PGRTDNAVKN HWHVVMARKQ REQSKLCGKR SFQDLYNNSS SSSILNFPYK  120
TRIGYENGKF YQFQNNLDTS SSSSLASWNF ASVLTKNTTT ATLFPDNSLA EKLSDCSKSS  180
DRSFLYKFCQ NPTFSSSLPN YKRIVPNAFG FFNPSDDGTI RKDLMSSLRD NSSTLIPNLK  240
ASKEKEQGHE VEIEKHKEVP FIDFLGVGVS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20248942107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32397
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461367.11e-129transcription factor MYB54
TrEMBLA0A2K3L8L50.0A0A2K3L8L5_TRIPR; R2R3-MYB transcription factor (Fragment)
STRINGXP_004502570.13e-93(Cicer arietinum)
STRINGXP_007137516.13e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-39myb domain protein 52