PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31939
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 498aa    MW: 55969.3 Da    PI: 5.7566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31939genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.57.9e-1261264871374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                l++ L++cA+ ++ g+ +la +l++ ++ l  + ++ + + ++a yf  AL++r+++ ++++             ++e+   ++
  Tp57577_TGAC_v2_mRNA31939 126 LIHMLMTCADSLQRGNIQLAGSLIEGMQGLltNMNTNSGIGKVAGYFIDALNRRIFG-QNNII------------HIENDVLYH 196
                                689*************************99644445589******************.22222............455556788 PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 ++e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++++++l+e+g rLa
  Tp57577_TGAC_v2_mRNA31939 197 HYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSHDDRDNLREIGLRLA 280
                                9*********************************************************************************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh 248
                                ++A++++v+f f+ ++a rled+++++L+v+++Ea+aVn+++qlhrll ++ + ++  ++++vL  ++sl+Pk+++vveqea+h
  Tp57577_TGAC_v2_mRNA31939 281 ELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSEPDPNNpsAIETVLGWIRSLNPKIMTVVEQEANH 364
                                **************9888******************************888776666699************************ PP

                       GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                n+  F++rf+eal+yys++fdslea      e ++ + + +l+rei+nvv+ceg +r+erhe l kWrerl++ GF+p++l+++
  Tp57577_TGAC_v2_mRNA31939 365 NEDGFMDRFTEALHYYSTVFDSLEAC---PVEPDKAMAEIYLQREICNVVCCEGPARVERHEPLIKWRERLGKTGFRPLHLGSN 445
                                ***********************999...456777788889******************************************* PP

                       GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                a kqa++ll  ++ +gy vee++gsl+lgW++rpL+++SaW+
  Tp57577_TGAC_v2_mRNA31939 446 AFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQ 487
                                *****************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.1E-281883IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.1E-161889No hitNo description
PROSITE profilePS5098560.774100467IPR005202Transcription factor GRAS
PfamPF035142.7E-123126487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEIEIDSVSS PSKVKEIDGL LADVGYKVKS SELHQVAQNI ERLENVIVNS SDISQFASDT  60
IHYDPSDIGN WVDNLLSEFD HTNSLPYDFS QLSDLAQDQH QHHHHHHQNH QLKVVTTVEE  120
DSAIKLIHML MTCADSLQRG NIQLAGSLIE GMQGLLTNMN TNSGIGKVAG YFIDALNRRI  180
FGQNNIIHIE NDVLYHHYYE ACPYLKFAHF TANQAILEAF NGHDCVHVID FNLMHGLQWP  240
ALIQALALRP GGPPFLRLTG IGPPSHDDRD NLREIGLRLA ELARSVNVRF AFRGVAAWRL  300
EDVKPWMLQV SSKEAVAVNS IMQLHRLLGS EPDPNNPSAI ETVLGWIRSL NPKIMTVVEQ  360
EANHNEDGFM DRFTEALHYY STVFDSLEAC PVEPDKAMAE IYLQREICNV VCCEGPARVE  420
RHEPLIKWRE RLGKTGFRPL HLGSNAFKQA SMLLTLFSAE GYCVEENQGS LTLGWHSRPL  480
IAASAWQAVP ETLRFDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6113348625377Protein SCARECROW
5b3h_D2e-6113348625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192745.10.0DELLA protein RHT-1-like
SwissprotQ8S4W71e-162GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2K3MQB80.0A0A2K3MQB8_TRIPR; Della protein gai-like protein
STRINGXP_004507626.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-161GRAS family protein