PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 420aa MW: 46181.9 Da PI: 8.0095 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 32 | 58 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Tp57577_TGAC_v2_mRNA31372 32 PGEPDCSYYIRTGLCRFGATCRFNHPP 58 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.6e-13 | 78 | 103 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++C+F+H++ Tp57577_TGAC_v2_mRNA31372 78 GQPECQYYLKTGTCKFGATCRFHHPK 103 5799********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.5e-12 | 125 | 149 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Tp57577_TGAC_v2_mRNA31372 125 ESECAYYLRTGQCKFGNTCKFHHPQ 149 679********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 281 | 306 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ Tp57577_TGAC_v2_mRNA31372 281 DQPECQFYMKTGDCKFGAVCRFHHPR 306 689*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.5e-12 | 326 | 352 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Tp57577_TGAC_v2_mRNA31372 326 PGEPLCVFYSRYGICKFGPSCKFDHPM 352 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-8 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 37 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 76 | 104 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 79 | 103 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 82 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 125 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-9 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 282 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 285 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 328 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 330 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDQFDSIPQE AMWQMNLRSS ETMESGPYPE HPGEPDCSYY IRTGLCRFGA TCRFNHPPNR 60 KLAIATARMK GEFPERLGQP ECQYYLKTGT CKFGATCRFH HPKDKAGIAG RVALNILGYP 120 LRPNESECAY YLRTGQCKFG NTCKFHHPQP NNMVLSMRGS PAYPTVQSPT TPGQQSYAAG 180 ITNWSSSSYI PSPRWQGPSS YAPLILPQGM VSVPGWSTYN GQMGSDSPQQ TMRNDQTYGT 240 SHQGEPENAG LQGAYSQYRS GSVPVGFYAL QRENIFPERP DQPECQFYMK TGDCKFGAVC 300 RFHHPRERTV PTPDCILSPI GLPLRPGEPL CVFYSRYGIC KFGPSCKFDH PMGIFTYNVP 360 ASPLADASGR RLLGSSSGTA ALSLSSEGLV ESGSAKPRRL SLSETRPIPS GDDNIDDEG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31372 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624157.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | G7KRG6 | 0.0 | G7KRG6_MEDTR; Zinc finger CCCH domain protein | ||||
STRING | AES80375 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-176 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31372 |