PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 478aa MW: 54336.9 Da PI: 5.7881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.2e-13 | 304 | 350 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av+YI++L Tp57577_TGAC_v2_mRNA31183 304 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVDYINEL 350 5899***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-41 | 31 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.498 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-18 | 301 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.78E-14 | 304 | 355 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.5E-17 | 305 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 305 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-16 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEDFIISPSS SSSMISFLNE NPSPQTQTQT LQQKLQLLLQ SQSENWVYAI FWQTTKDEKG 60 NTYLSWGEGH FQGTKETTSS KKENDTNTDT STNGDAEWFY VMSLTRNFCV GNSSSISLPG 120 KAFALDSVLW LNSKHELQFY NCERSNEAHV HGIETLICIP TTNGVIEMGS YENIQQNWNL 180 VHQTKSMFQF QSTSSESNSK LDLISTTPLD KIQTFDQNIS FSDMGFISCA SKETDEKQKM 240 MNKKSQQKHN IVVSPKKSHY VDSEHSDSDY CPQLETPKSD SVDEKRELKK RGRKPLTGTT 300 QTPMNHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL SDAVDYINEL KSKIEDLESE 360 KKRESKKVKM ETMDNQSTMT TSTVVDQKIP NNVIALEIDV KIIGNDAMIR VQSENINHPG 420 ARLMSVFKDL EFQVHHASIS CVNEVMVQDV VVVQVPKEIR NEESLKSAIL MRLDDQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-32 | 24 | 190 | 2 | 194 | Transcription factor MYC3 |
4rqw_B | 3e-32 | 24 | 190 | 2 | 194 | Transcription factor MYC3 |
4rs9_A | 3e-32 | 24 | 190 | 2 | 194 | Transcription factor MYC3 |
4yz6_A | 3e-32 | 24 | 190 | 2 | 194 | Transcription factor MYC3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31183 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444575.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A2Z6MBV4 | 0.0 | A0A2Z6MBV4_TRISU; Uncharacterized protein | ||||
STRING | XP_004510627.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46830.1 | 5e-50 | NACL-inducible gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31183 |