PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31105
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 283aa    MW: 32478.8 Da    PI: 5.0261
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31105genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA31105 14 KGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                               799*****************99************************97 PP
2Myb_DNA-binding58.81.2e-1867110146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++T++E+el+++ +k lG++ W+tIa++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA31105  67 RGNFTQQEEELIIRMHKNLGNR-WSTIAAELP-GRTDNEVKNHWHT 110
                                89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.443961IPR017930Myb domain
SuperFamilySSF466893.52E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-91363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001676.40E-91661No hitNo description
PROSITE profilePS5129426.61662116IPR017930Myb domain
SMARTSM007178.6E-1766114IPR001005SANT/Myb domain
PfamPF002495.4E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2669116IPR009057Homeodomain-like
CDDcd001672.68E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MARTPICDKS GMRKGTWTAE EDRKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNIKRGNF TQQEEELIIR MHKNLGNRWS TIAAELPGRT DNEVKNHWHT SLKKRVQHNT  120
IINEEIKSKH IESTQERDIS FSQVTTPASS QNTNGPLSPI SSSSGFSSTT YSYQSSNHDL  180
DDFGFLDGFI ESMDQSFWLD DDLSTIVQDN TNCAFQNQDT TTNDVFLVSP NNSSNESNLV  240
LDNDFSSFLD SYEESTVDSF WTPPYEADMS HVLYNQQWGF LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388501e-116BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513558.11e-120transcription factor MYB30-like
TrEMBLA0A2K3PRR90.0A0A2K3PRR9_TRIPR; MYB-related protein MYB 4-like
STRINGXP_004513558.11e-120(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.17e-59myb domain protein 13