PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22212.1 Da PI: 3.9956 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.3e-09 | 3 | 25 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W+tIa++++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA31093 3 K-WSTIAAELP-GRTDNEVKNHWHT 25 4.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.692 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.26E-8 | 2 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-7 | 3 | 25 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 3 | 41 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-6 | 3 | 27 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSKWSTIAAE LPGRTDNEVK NHWHTSLKKR VQHNTITNSE EIKATKSRDI TISQVTTPAS 60 SQDTNGPLSP FSSSSEFSST HDLDDMSFID AFIESMDQSF LLDDLNGIVQ NNTNCDFQNQ 120 DTSLVSPNHS SNDDSNLVVD NDFGSFVDAY YESTVDNFWT PYEAEMSHVP TPSHMLMTTL 180 PMESEYFSVV FEEDLWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31093 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443539.1 | 2e-57 | transcription factor MYB13 | ||||
TrEMBL | A0A2K3LA91 | 1e-126 | A0A2K3LA91_TRIPR; MYB-related protein MYB 4-like (Fragment) | ||||
STRING | XP_004513558.1 | 1e-47 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 5e-12 | myb domain protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31093 |