PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31005
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 503aa    MW: 55879.9 Da    PI: 10.1729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31005genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-11341387354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+E+rRR riN  +++Lr++lP++      K +Ka+iL ++++ +k+L
  Tp57577_TGAC_v2_mRNA31005 341 KKHSEAEKRRRMRINGQYDTLRDILPNL-----IKKDKASILVETIKQVKEL 387
                                68*************************9.....699**********999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.653338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12341403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-9341390No hitNo description
PfamPF000101.0E-8341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-13342405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.16E-7427491No hitNo description
Gene3DG3DSA:3.30.70.2601.1E-6428488No hitNo description
CDDcd048739.67E-6429479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MHRVAAYDGT VQWVPFVINL ESLANPLVNS AVGQRIILER SNNTNALQAA TGNIINNSAM  60
MVRTLTNGSA AEELPIGLKP SSAMTVIPIA DVTQTPSANS MAQGSGIKIV SAPKKRMRTY  120
QAGKDAEAEA DELTKEMTAD TTHVKASTSS LKKTVGATVV EGEERRQYYK CRARVPLKFY  180
EVKGVGNESE NENSAEFVYV SDDDGDWEKE WGNKVIQDDH QMQGNEKPKT RMKTVARKSV  240
VNRVARFDFD SNLNVGVDTK DCELEFTEGA DDVFVGVRTK VSIGSKMVLL RQGMQHVRNY  300
YNSEAQMIRN NFSRSTFISQ TYKSSFLKQR SKAENKLLAA KKHSEAEKRR RMRINGQYDT  360
LRDILPNLIK KDKASILVET IKQVKELKKK ASKLEEDNHG TSKEVKFPSG VDKLSLEKCN  420
DKEGLVKATL SCEDRPGLMS SIARALGSMK AKVVKVEMVT VGGRNRSVLW VQGIENEGLG  480
MLKSTLKVVM HKPSSKMRRF TQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317281e-134CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGAES960310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-36bHLH family protein