PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3055
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 485aa    MW: 53353.9 Da    PI: 6.8543
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3055genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17152201155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA3055 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                               78*******************......55************************997 PP
2AP239.61.3e-12244290151
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                               s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  Tp57577_TGAC_v2_mRNA3055 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAI 290
                               89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9152201IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15152210IPR016177DNA-binding domain
PROSITE profilePS5103217.411153209IPR001471AP2/ERF domain
CDDcd000181.64E-10153208No hitNo description
SMARTSM003801.4E-30153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16153209IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-16244303IPR016177DNA-binding domain
PfamPF008477.3E-8244289IPR001471AP2/ERF domain
CDDcd000188.84E-24244304No hitNo description
PROSITE profilePS5103214.921245302IPR001471AP2/ERF domain
SMARTSM003801.6E-28245308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-15245302IPR001471AP2/ERF domain
PRINTSPR003677.2E-5246257IPR001471AP2/ERF domain
PRINTSPR003677.2E-5284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLDLNLNDEN STDSTQNINS PMISENFPQT SWNQMVESGT SNSSIVNADG SSNNANDEDS  60
CSTRVDDVFT FSFDILKMEG SNDVVTKEFF PVNGGGDDDE GWCNNWKLQA TSSFPVKNGS  120
VDLSFNQNEE MKIVQPQQQA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVGADINFNL NDYEDDLKQT KNLSKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI INNGREAVTN  300
FEPSAYQGEM KSAANNEGGS QNLDLNLGIA TPGPGPKENS GKFHSPSVPC TSSRMETNVL  360
GTGNPSLKRL LVTEEHHSLS NGMYPAFFPN EGRADSIGKD PSKGHPNWAW QPHGQITAIP  420
MPPASAAAAS SGFSISSPFP SLTPTFPPRS MNTIPHSLYF TLPNVPNSNA SQYYYQVKPP  480
QAPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3055
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191944.10.0ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK031e-114RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K3NZQ00.0A0A2K3NZQ0_TRIPR; Ethylene-responsive transcription factor rap2-7-like protein
STRINGXP_004506004.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-127related to AP2.7