PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30536
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 270aa    MW: 31259.1 Da    PI: 7.1812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30536genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-172269148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd +lv+++  +G g+W+t+a   g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA30536 22 KGPWTLEEDTILVNYISTHGEGHWNTVACSAGLRRSGKSCRLRWLNYL 69
                               79********************************************97 PP
2Myb_DNA-binding49.41.1e-1575118146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA30536  75 RGNITLQEQILILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                                7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6351769IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-201872IPR009057Homeodomain-like
SuperFamilySSF466894.87E-3020116IPR009057Homeodomain-like
SMARTSM007171.6E-122171IPR001005SANT/Myb domain
PfamPF002493.6E-152269IPR001005SANT/Myb domain
CDDcd001672.64E-82469No hitNo description
PROSITE profilePS5129422.62570124IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2273122IPR009057Homeodomain-like
SMARTSM007172.7E-1374122IPR001005SANT/Myb domain
PfamPF002494.9E-1475118IPR001005SANT/Myb domain
CDDcd001673.93E-979118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MIDMDIKIKK SDESAKLNEL RKGPWTLEED TILVNYISTH GEGHWNTVAC SAGLRRSGKS  60
CRLRWLNYLR PDVRRGNITL QEQILILDLH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
VKQAKQLKCD VNSKQFRDVL RHVWMPRLLE QVQPVPEIPD PNNLNRSNFI LNQNILHSSV  180
SEIEWPKSNN SSIASPISSN SSSVEFQVPS NSELLNHDGS KLWSNFNNQV SEQGNSGDCD  240
SLENLWNDEN MWFLQQLSDD LEIKYNYFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231911624120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30536
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591357.11e-133transcription factor JAMYB
SwissprotQ10MB42e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2K3NKD60.0A0A2K3NKD6_TRIPR; MYB-related protein P-like
STRINGAES616081e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.16e-78myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]