PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Dof | ||||||||
Protein Properties | Length: 290aa MW: 32436.9 Da PI: 7.703 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.1e-40 | 37 | 97 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +alkcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Tp57577_TGAC_v2_mRNA3052 37 PEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 6789*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-32 | 25 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-34 | 39 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGMDPSNGQN QQMSNQSLEN MITCSKTQED KKPKPQPEAL KCPRCDSSNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSTSK RTQDQTFPTN PNNPLTCFPS 120 LSYDSNDLTL ALARLQKGHL GFEHEHDFSS ILGNHTNINT NTSCAILNNH GMNNSSNNHG 180 FFEALMGSQN NVQNLYYNTG EVDNGNANGE MMLPYDHEMS IATTQAVTVT TMKQEMCNVR 240 EQNENRVLLG FPWQFNNSDT NMAEIDHSGR GGWNGLNSSW HGLLNSPLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3052 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137668 | 0.0 | AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence. | |||
GenBank | AC149268 | 0.0 | AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505949.1 | 1e-166 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A2K3LIE4 | 0.0 | A0A2K3LIE4_TRIPR; Dof zinc finger protein | ||||
STRING | XP_004505949.1 | 1e-165 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 7e-46 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3052 |