PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30436
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 366aa    MW: 41993.8 Da    PI: 5.9292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30436genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13180231155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Tp57577_TGAC_v2_mRNA30436 180 QRMTHIAVERNRRRQMNDHLSVLRSLMPSS---YIQRGDQASIIGGAIDFVKELE 231
                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-10178228No hitNo description
PROSITE profilePS5088815.656179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-11180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13180242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERLQGPINS YLFGEVNCLD QTLLDEENLR FEEEEQFLMS SLEDNIPFLQ MLQNVETPQF  60
FPLKEPNFQT LLRLQHMKKP WEDLSFVPRI DSQQVQTTLE FESCVTQDIL EMQSPVKSES  120
NELLQHKVST SCIEKFSFEC NQEQRKIVQS CSKSQVGTTK EKRKRKRTRP VKNKEDVESQ  180
RMTHIAVERN RRRQMNDHLS VLRSLMPSSY IQRGDQASII GGAIDFVKEL EQLLESLEAQ  240
KRIKKNEEFG SSSSSSPTSY GMKLSSCEEN EVKAENKSEA ADIKVTLIQT HVNLKIECKK  300
RHGQLIKVIV ALENLRLSIL HLNITSFDSS VLYSLNLKIE EDCKLGTAND IAEAVHQIFS  360
YINGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180191RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30436
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444538.10.0transcription factor bHLH67
TrEMBLA0A072TNY80.0A0A072TNY8_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA07G05500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-70bHLH family protein