PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29832

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 35057 Da PI: 9.1991

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29832	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	159	213	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ +e++ LA++l+L rqV vWFqNrRa+ k Tp57577_TGAC_v2_mRNA29832 159 RKKLRLTKEQSLLLEESFKLQSTLNPKEKQALARQLNLRPRQVEVWFQNRRARTK 213 788899***********************************************98 PP
2	HD-ZIP_I/II	119.3	2e-38	159	249	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rl+keq+ lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke Tp57577_TGAC_v2_mRNA29832 159 RKKLRLTKEQSLLLEESFKLQSTLNPKEKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKEL 242 69******************************************************************************** PP HD-ZIP_I/II 85 eeLreelk 92 +eL+ +lk Tp57577_TGAC_v2_mRNA29832 243 QELK-SLK 249 *9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-18	153	216	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	155	215	IPR001356	Homeobox domain
SMART	SM00389	3.8E-15	157	219	IPR001356	Homeobox domain
CDD	cd00086	2.03E-15	159	216	No hit	No description
Pfam	PF00046	1.8E-15	159	213	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-16	159	213	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	190	213	IPR017970	Homeobox, conserved site
SMART	SM00340	3.8E-23	215	258	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.2E-9	215	250	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MPPQKSLVLI LHLPPLFKTI PYIHFFIQNI STLKHLLHSY FFFLNYQMGF NDQNSLHLVL 60 GLSLNTSTTP KQITTTTTTV KNPYSSTEPS LTLGLSGESP NIHRINQTSS PHSVVVSSFS 120 NGRVLQVKRE REEEEDQEVE EERVSSRVSD EDEDATNARK KLRLTKEQSL LLEESFKLQS 180 TLNPKEKQAL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLKK 240 ELQELKSLKQ AQPLYMPMPA ATLSMCPSCD RLGRVADGGG SNKKITSFTM APNTHFYNPF 300 NNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	215	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29832

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003611524.1	1e-135	homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-86	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2K3PE04	0.0	A0A2K3PE04_TRIPR; Homeobox-leucine zipper protein HAT22-like
STRING	AES94482	1e-135	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-68	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29832

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]