PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29130
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 292aa    MW: 33147.6 Da    PI: 8.2419
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15201001196
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                                ++++rl +p+kf+++hg     s  + ++ ++g +W+v+   ++  g+++++kGWk+F +   L  g  vvFk+++  s+f   
  Tp57577_TGAC_v2_mRNA29130  20 TNLQRLKIPNKFTKSHGVG--LSNPVLINPPDGTKWKVYW--KNINGEIWFEKGWKSFTQNYSLGHGSLVVFKYKEGtSKF--D 97 
                                456899**********644..555688899**********..99999***************************9765777..5 PP

                                EEE CS
                         B3  94 vkv 96 
                                v +
  Tp57577_TGAC_v2_mRNA29130  98 VLI 100
                                555 PP
2B340.45.3e-132092901196
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                 +s++l +p       g +++++k+++  +   rsW+vkl   + + ++  l++GW+ F ++ gLk gD++vF+l+++++  ++
  Tp57577_TGAC_v2_mRNA29130 209 VESHQLGVPSLK----GVIENKGKDVM-LQIGKRSWNVKLLRcSENTNTRRLSAGWRLFLRESGLKPGDVCVFELINKNDLIFK 287
                                444444444332....33344555666.56789*******55555556678************************988887667 PP

                                EEE CS
                         B3  94 vkv 96 
                                v+v
  Tp57577_TGAC_v2_mRNA29130 288 VHV 290
                                766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-198104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.91510104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1811111IPR015300DNA-binding pseudobarrel domain
CDDcd100177.62E-1512101No hitNo description
SMARTSM010191.5E-1213104IPR003340B3 DNA binding domain
PfamPF023625.3E-132097IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15194291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-14194291IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-13197291No hitNo description
SMARTSM010196.2E-5198289IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449199291IPR003340B3 DNA binding domain
PfamPF023623.4E-10208290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MARTNSTKHS IHFFKIILQT NLQRLKIPNK FTKSHGVGLS NPVLINPPDG TKWKVYWKNI  60
NGEIWFEKGW KSFTQNYSLG HGSLVVFKYK EGTSKFDVLI LGQSAVEIDY DPSSDTHDDD  120
DDKNDNVGDS DDDEPVKILD ENSDDESVMI LDELSSPRPH KKVRGETKNI TKRTSSLNMP  180
KEARAQEIAE NFISSNPFFT ILINTYHVVE SHQLGVPSLK GVIENKGKDV MLQIGKRSWN  240
VKLLRCSENT NTRRLSAGWR LFLRESGLKP GDVCVFELIN KNDLIFKVHV F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.11e-137B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3NEF91e-179A0A2K3NEF9_TRIPR; B3 domain-containing protein (Fragment)
STRINGAES707041e-136(Medicago truncatula)
STRINGAES858321e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-16B3 family protein