PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29027
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 285aa    MW: 30498.8 Da    PI: 7.5797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29027genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.7e-11167214455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Tp57577_TGAC_v2_mRNA29027 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214
                                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.98E-11161218No hitNo description
PROSITE profilePS5088815.828163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18163232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDPGAMMNEG SFPNGNGNTT PFSLAEIWQF PATINGGEGG LGLRRPQFGN GLGQFADFGT  60
GSNRDVSGPE SRVVLNHGGG KKRRDSEDDS AKCVSTSNGG ANAVNDSDGK RTKASGNRNE  120
GGDGKVEGEA SSGKPAEQSS KPPPPDPPNP KQDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR LNTGIEAFPP  240
KDFGQQTFDL AGMPFVSQTT REPSRGSSPE WLHMQVGGGF ERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407540.0BT140754.1 Medicago truncatula clone JCVI-FLMt-7G3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509918.11e-170transcription factor BHLH089-like
SwissprotQ84T082e-80BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2Z6PAL01e-180A0A2Z6PAL0_TRISU; Uncharacterized protein
STRINGXP_004509918.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-94BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]