PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23783.1 Da PI: 9.6412 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.7e-15 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++s+r tf +R+ngi+KK +E+S+LC+++++ ii+ +++ Tp57577_TGAC_v2_mRNA28663 11 ITSNSKRRETFRRRKNGIMKKLNEISTLCGIDACTIIYDQNN 52 789999999****************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.371 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-21 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.02E-26 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.6E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-14 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MARKKVKIAY ITSNSKRRET FRRRKNGIMK KLNEISTLCG IDACTIIYDQ NNPQAEVWPS 60 DLGVKSVLFR FGSLPEFARS KKMVDQEAFL RESIEKACDQ WKKQREVTRK KEMVNIVDHY 120 IRSGEFNSNL MSKDDLNDLS SFIHDNYLKE INRKMKGMQI ETQEPVRNGG DVMNGTEERE 180 IIGHAQGLVS AGEDHIGNMG QREPRQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKIAYITSNSKRRETFRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28663 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027190082.1 | 9e-79 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3NSI9 | 1e-130 | A0A2K3NSI9_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | XP_004499496.1 | 4e-78 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16291 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-37 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28663 |