PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28391

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 94aa MW: 10989.6 Da PI: 10.6992

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28391	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	1	36	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ ++ g+Wk I++++ ++R++ q+ s+ qky Tp57577_TGAC_v2_mRNA28391 1 FLKGLLKYQRGQWKEISKEFVTTRSPSQIASHAQKY 36 7888999999*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.95E-8	1	42	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-8	1	39	IPR006447	Myb domain, plants
CDD	cd00167	8.47E-4	1	37	No hit	No description
PROSITE profile	PS51294	13.459	1	41	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-5	2	38	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
FLKGLLKYQR GQWKEISKEF VTTRSPSQIA SHAQKYFDRN KDAVKKARKK RRSIHDTTID 60 NNGRLVILPV EKQNEIPSIE QQQKEIPSHC TTLN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28391

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612667.1	3e-27	transcription factor SRM1
Swissprot	Q8S9H7	4e-14	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2K3N7F8	1e-61	A0A2K3N7F8_TRIPR; MYB-like protein H-like
STRING	AES95625	1e-26	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16911	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.2	1e-14	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28391

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]