PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G10580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 29278.6 Da PI: 5.3771 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.2e-14 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++d+ +++G+g+Wk+I+r+ + R++ q+ s+ qky AT3G10580.2 96 PWSPEEHRLFLDGLNKYGKGDWKSISRECVTSRSPMQVASHAQKY 140 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 16 | 4 | 56 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.964 | 89 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-17 | 90 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-16 | 92 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.6E-10 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 94 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-11 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-11 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDAAIPIWKR DDDKRFELAL VRFPAEGSPD FLENIAQFLQ KPLKEVYSYY QALVDDVTLI 60 ESGKYPLPKY PEDDYVSLPE ATKSKTQGTG KKKGIPWSPE EHRLFLDGLN KYGKGDWKSI 120 SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH 180 FDDQSPPDHY QDYFSQSNVT IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD 240 GEDDGSLASF QQLYKA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258961_at | 0.0 | ||||
Expression Atlas | AT3G10580 | - | ||||
AtGenExpress | AT3G10580 | - | ||||
ATTED-II | AT3G10580 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00344 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G10580.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G10580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 0.0 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 0.0 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078132.1 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | A8MRL4 | 0.0 | A8MRL4_ARATH; Homeodomain-like superfamily protein | ||||
STRING | AT3G10580.1 | 1e-174 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G10580.2 |
Entrez Gene | 820225 |
iHOP | AT3G10580 |
wikigenes | AT3G10580 |
Publications ? help Back to Top | |||
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