PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28212
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 330aa    MW: 36611 Da    PI: 8.7943
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28212genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-41191268178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  Tp57577_TGAC_v2_mRNA28212 191 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQH 268
                                6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819954.45E-563116No hitNo description
Gene3DG3DSA:4.10.1100.101.5E-35185253IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376189266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38190269IPR004333Transcription factor, SBP-box
PfamPF031103.1E-31192265IPR004333Transcription factor, SBP-box
SuperFamilySSF819954.45E-5261308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLDYEWGNPT NMMLTGNEDN SSAAASDQAQ RQIFDHYASQ AMLSDNYLNG PGPTINTNTG  60
EFTHHHHQQQ QHHFSPQAQQ QQHQIHHSFF DPRAFHGASS TGSYPPPQPQ PPSMLSLDPL  120
SGHHGGHGSG FLLVPKSEDL NRPMDFVGSR IGLNLGGRTY FSSSEDDFVS RLYRRSRQPE  180
PGSLGSSNSP RCQAEGCNAD LSQAKHYHRR HKVCEFHSKA ATVIAAGLTQ RFCQQCSRFH  240
LLSEFDNGKR SCRKRLADHN RRRRKTQHPN TQDINKSSEN AATRSPPESG TQTTSSVTVA  300
VSPPDYFRQK SYQSSSPSTT SNSLFFSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-32182265184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28212
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122292e-72KF312229.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626693.10.0squamosa promoter-binding-like protein 8
TrEMBLG7LBJ70.0G7LBJ7_MEDTR; Putative transcription factor SBP family
STRINGAET011690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-73squamosa promoter binding protein-like 8