PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28059
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 345aa    MW: 38668.4 Da    PI: 4.6967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28059genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.4e-112613011055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Tp57577_TGAC_v2_mRNA28059 261 KKRRERINERLKILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 301
                                89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13257317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-12259315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-12260305No hitNo description
PfamPF000104.3E-8261301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPSEQSCEE WSSLSGFYTA EEADFMGQLL NNSQIPQHHY GNFNFETPST LWPIHDSTIV  60
SMNNSSHFPQ NYDNNSNNTD FLSFLQESNF ISATSNISPN TINGGNICLN DQGANIGYIS  120
MENVNFSTYS IQGNDNQQIT ENTDEEFGQE VSESTKEGIS NNLEKSGKRS RSSIKVQKNK  180
KNVKSRKKPK SEFISNTEED ESTDLQEQNL SSEDDDFNAS QKVKAGGSSI LNQNDSTALK  240
LKGKTRCDKS SATDPQGVYA KKRRERINER LKILQSLVPN GTKVDISTML EEAVQYVKFL  300
QVQIKLLSSD DHWMYAPIAY NGMNIGLNLD INYPNQTTIE NIRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260271KKRRERINERLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-31AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592480.10.0transcription factor bHLH139
TrEMBLA0A2K3NPQ00.0A0A2K3NPQ0_TRIPR; Transcription factor bHLH84-like protein
STRINGAES627310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-58bHLH family protein