PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27786
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 351aa    MW: 37754 Da    PI: 9.7307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27786genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-191459147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W++eEde l ++v+++G+++W+ I++ ++ gR++k+c++rw + 
  Tp57577_TGAC_v2_mRNA27786 14 KGPWSPEEDEALQKLVEKHGPRNWSIISKSIP-GRSGKSCRLRWCNQ 59
                               79******************************.***********985 PP
2Myb_DNA-binding53.74.7e-1768110347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Tp57577_TGAC_v2_mRNA27786  68 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                                79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.451964IPR017930Myb domain
SuperFamilySSF466892.06E-3211107IPR009057Homeodomain-like
SMARTSM007171.2E-171362IPR001005SANT/Myb domain
PfamPF002497.6E-191459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-261567IPR009057Homeodomain-like
CDDcd001671.37E-161658No hitNo description
SMARTSM007172.9E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129420.75766115IPR017930Myb domain
CDDcd001671.70E-1168111No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2368114IPR009057Homeodomain-like
PfamPF002491.5E-1468110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNTAITRKEM DRIKGPWSPE EDEALQKLVE KHGPRNWSII SKSIPGRSGK SCRLRWCNQL  60
SPQVEHRAFT PEEDDTIIRA HARFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSSMV  120
DESPPLKRSV SAGAAIPVST GLYINNPSSP GSPSGSDVSE SSVPIVNSSH VYRPVPTRTV  180
TLPIPVPITV LPPIETTSSS KSSKSPKSPK SNDPPTSLSL SLPGVDSSSE DSNRATEPAV  240
KKSAPPTPPP PLPSAIPLIP IMTTAVPDSV PMAVPMMQQF NDPATVTARG SGSAVPFNFS  300
AELLTVMQEM IRTEVRSYMA GLEQQNGMCI ADDGFRNASV KRIGISRIDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-42131143104MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-42131143104C-Myb DNA-Binding Domain
1msf_C7e-42131143104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27786
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524860.0BT052486.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-K-6 unknown mRNA.
GenBankBT1474000.0BT147400.1 Medicago truncatula clone JCVI-FLMt-13F11 unknown mRNA.
GenBankCT5730770.0CT573077.3 Medicago truncatula chromosome 5 clone mth2-43j18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611666.21e-179transcription factor MYB44
SwissprotO231608e-96MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2K3MZN80.0A0A2K3MZN8_TRIPR; Transcription factor MYB 44-like protein
STRINGAES946241e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-75myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]