PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27669
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 308aa    MW: 34065.6 Da    PI: 7.5001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-10959447
                               S-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47
                               W+ eE++ + +a++++ ++        +W++Ia++++ ++t +++k ++q +
  Tp57577_TGAC_v2_mRNA27669  9 WSYEEEKSFENAIAMHWNEkeeedsneQWEKIASCVP-NKTMEEVKQHYQLL 59
                               *************************************.***********965 PP
2Myb_DNA-binding38.92e-12142186347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA27669 142 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 186
                                7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.798463IPR017884SANT domain
SMARTSM007171.1E-5562IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-9764IPR009057Homeodomain-like
PfamPF002493.8E-8958IPR001005SANT/Myb domain
CDDcd001672.10E-7960No hitNo description
Gene3DG3DSA:1.10.10.605.8E-5959IPR009057Homeodomain-like
PROSITE profilePS5129416.873135191IPR017930Myb domain
SuperFamilySSF466898.22E-17137192IPR009057Homeodomain-like
SMARTSM007172.3E-10139189IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.3E-17139189IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-11140185IPR009057Homeodomain-like
PfamPF002497.6E-11142186IPR001005SANT/Myb domain
CDDcd001671.07E-9142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSSSSGTIWS YEEEKSFENA IAMHWNEKEE EDSNEQWEKI ASCVPNKTME EVKQHYQLLV  60
DDVSAIEAGH VSFPNYANDL ETTTNSSNKD SSKSSTSSYK RSSSCNFGSG FSGLGHDSNH  120
HSSGKGGLSR SSSEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNF VISRTPTQVA  180
SHAQKYFIRL NSMNRDRRRS SIHDITSINN GDVANNHQAP ITGQHGNTIP SNTMGLGQSM  240
KHRVQPHHHH HGGLGMYGAP VGHPVVAPPA HMTSAVGTPV MLPHHHPHHP PYVVPLAYPM  300
APPTMHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-14276473RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27669
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458057.10.0transcription factor MYBS1
SwissprotB8A9B25e-79MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH595e-79MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A072USM01e-179A0A072USM0_MEDTR; MYB-like transcription factor family protein
STRINGXP_004508571.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-60MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]