PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27577

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 348aa MW: 38513.8 Da PI: 9.5832

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27577	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.2e-16	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Tp57577_TGAC_v2_mRNA27577 62 REKWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 106 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.21E-16	56	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.293	57	111	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.4E-16	60	109	IPR006447	Myb domain, plants
SMART	SM00717	4.2E-13	61	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-9	62	105	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-14	62	105	IPR001005	SANT/Myb domain
CDD	cd00167	2.66E-10	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MANQDQDGLT CFSVSPSNSI GNGVYLNSGS HSVTHIQLSD HLSCANDYAL KIRKPYTITK 60 HREKWTDEEH KKFLEALKLY GRAWRRIEEH VGTKTAVQIR SHAQKFFSKV LRDKSEYTTK 120 TKGSIEIPPP RPKRKPVHPY PRKLVETTNS KGISIPKKAM NPISLKTSDF DQENQSPKSV 180 LSTPGSESLS SSDSDTINVS LSPISSISCV CASVFTSAEF KTPSKEEARL DADSASDEKA 240 VMKLEILTNE IVSAKESGIT EESSRQTLKL FGMTLFVTDT HRTSSPTIEA CKPIPINIDF 300 SKVEGKLELL GNNSLCEKSA ISKLRVTVRH ETCGKGFVPY KRCMSKK*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MANQDQDGLT CFSVSPSNSI GNGVYLNSGS HSVTHIQLSD HLSCANDYAL KIRKPYTITK  60
HREKWTDEEH KKFLEALKLY GRAWRRIEEH VGTKTAVQIR SHAQKFFSKV LRDKSEYTTK  120
TKGSIEIPPP RPKRKPVHPY PRKLVETTNS KGISIPKKAM NPISLKTSDF DQENQSPKSV  180
LSTPGSESLS SSDSDTINVS LSPISSISCV CASVFTSAEF KTPSKEEARL DADSASDEKA  240
VMKLEILTNE IVSAKESGIT EESSRQTLKL FGMTLFVTDT HRTSSPTIEA CKPIPINIDF  300
SKVEGKLELL GNNSLCEKSA ISKLRVTVRH ETCGKGFVPY KRCMSKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27577

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028215515.1	1e-137	protein REVEILLE 1-like
Swissprot	F4KGY6	8e-57	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2K3NB78	0.0	A0A2K3NB78_TRIPR; MYB family transcription factor (Fragment)
STRING	AES70883	1e-173	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-42	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27577

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]