PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27339
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 135aa    MW: 15057.6 Da    PI: 9.4494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27339genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-201868255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                               +y+GVr ++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  Tp57577_TGAC_v2_mRNA27339 18 RYRGVRCRP-WGKFAAEIRDS---NrQGQRVWLGTFNTAEEAARAYDRAAYNMRG 68
                               6*****999.**********4...3345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-311878IPR001471AP2/ERF domain
PfamPF008475.5E-151868IPR001471AP2/ERF domain
CDDcd000183.63E-161877No hitNo description
SMARTSM003802.0E-331882IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-231877IPR016177DNA-binding domain
PROSITE profilePS5103222.8271876IPR001471AP2/ERF domain
PRINTSPR003676.4E-111930IPR001471AP2/ERF domain
PRINTSPR003676.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSENGSKGRV KDDGGHVRYR GVRCRPWGKF AAEIRDSNRQ GQRVWLGTFN TAEEAARAYD  60
RAAYNMRGSF AILNFPNEYN MPARAGSGAT SASSSSSRNT NLEGRGKQVF EIEYLDDKLL  120
EELLDFEEKR NKGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-381613312128Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27339
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468688.12e-53ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3PGS51e-93A0A2K3PGS5_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGXP_004495317.12e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]