PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G43410.1 | ||||||||
Common Name | ERF096, MWF20.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14342.8 Da PI: 7.7584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.8e-21 | 14 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g AT5G43410.1 14 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 64 8********.**********65443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.84E-26 | 14 | 73 | No hit | No description |
Pfam | PF00847 | 9.1E-16 | 14 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 14 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 14 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-24 | 14 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-35 | 14 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MDQGGRGVGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY 60 SMRGQAAILN FPHEYNMGSG VSSSTAMAGS SSASASASSS SRQVFEFEYL DDSVLEELLE 120 EGEKPNKGKK K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-93 | 1 | 131 | 1 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 18422329 | 0.0 | ||||
Genevisible | 249154_at | 1e-137 | ||||
Expression Atlas | AT5G43410 | - | ||||
AtGenExpress | AT5G43410 | - | ||||
ATTED-II | AT5G43410 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00029 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G43410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G43410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB025638 | 0.0 | AB025638.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ447034 | 0.0 | DQ447034.1 Arabidopsis thaliana clone pENTR221-At5g43410 ethylene-responsive factor (At5g43410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_199154.1 | 7e-92 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9LSX0 | 6e-93 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A178UK17 | 2e-90 | A0A178UK17_ARATH; Uncharacterized protein | ||||
STRING | AT5G43410.1 | 3e-91 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G43410.1 |
Entrez Gene | 834360 |
iHOP | AT5G43410 |
wikigenes | AT5G43410 |