PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30641.1 Da PI: 6.9014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Tp57577_TGAC_v2_mRNA26844 77 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAIAYDEAALRFKG 126 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-33 | 76 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-13 | 77 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.843 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-39 | 77 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-21 | 77 | 135 | No hit | No description |
PRINTS | PR00367 | 2.4E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDKRRESWEE EGKEDENLFP VFSERSQQDM SAIVSALTQV MGGNNNNSQM HEASSIHNIT 60 QQSQLPQQDQ GSVRRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFETA EAAAIAYDEA 120 ALRFKGSKAK LNFPERVQSS AEFGYSQQFH HIASNTSNMQ QSNQQVPLPH FSQETYSNPY 180 QYAAQAQLQA SGSSNFNQDM LHFYGRDMFV SNSQPLISNA SSSSSSSSGL SQQQQEFLRL 240 SMQFGGSSSX XXXXXXXXXX XXXTERMGIN E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-26 | 76 | 137 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26844 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139708 | 1e-180 | AC139708.15 Medicago truncatula clone mth2-9f16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602747.1 | 1e-129 | ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A2K3LDV8 | 1e-132 | A0A2K3LDV8_TRIPR; Ethylene-responsive transcription factor erf114-like protein | ||||
STRING | AES72998 | 1e-128 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 3e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26844 |