PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26596
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 504aa    MW: 56271.6 Da    PI: 8.2897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26596genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.5e-33202260260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+ a d++++ei+Y+g+Hnh+k
  Tp57577_TGAC_v2_mRNA26596 202 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRAIDGQITEIVYKGTHNHPK 260
                                8********************************************************85 PP
2WRKY106.51.4e-33368426159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA26596 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHNHD 426
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28193261IPR003657WRKY domain
SuperFamilySSF1182909.29E-26200261IPR003657WRKY domain
SMARTSM007749.4E-35201260IPR003657WRKY domain
PROSITE profilePS5081125.614202261IPR003657WRKY domain
PfamPF031063.7E-25202259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37353428IPR003657WRKY domain
SuperFamilySSF1182903.14E-29360428IPR003657WRKY domain
PROSITE profilePS5081138.136363428IPR003657WRKY domain
SMARTSM007743.2E-39368427IPR003657WRKY domain
PfamPF031065.0E-26369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTSSFFSDLL NSPTEQNLRD TERSHNSQVL SDQNGSGLPK FKSTPPPSLP LSPAPLFSPS  60
SYFSIPPGFS LSELLDSPVL LNSSHILPSP TTGSFANNQA LNWKSNYGEK QQNVKAEDKT  120
FSNFSFQAQP ALNQSSAATA QNNNGWSMVK TENSSSMQSF KPENNSTSEQ NNHKRGLQSD  180
NYNNYQTQPQ QQQVQTLSRR SDDGYNWRKY GQKQVKGSEN PRSYYKCTYP NCPTKKKVEK  240
RAIDGQITEI VYKGTHNHPK PLANKRNMNS MSSSSSSVAN PPSNGFENDM QMVLVTTPEN  300
SSISIGDDDF EQSSHKSGGD HEFGDDDQPD AKKWRIEGEN EGISSGVGNR TVREPRVVVQ  360
TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCP VRKHVERASQ DLRAVITTYE  420
GKHNHDVPAP RGSGNHSINK PQPNMPTINN TNNGFFNHEM MQNNGFPMDS YMNNMNQRVN  480
NIVRGRAKDE PLEDNSFFDS LLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35194429878Probable WRKY transcription factor 4
2lex_A3e-35194429878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26596
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599287.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-124WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0G3Y2B10.0A0A0G3Y2B1_MEDSA; WRKY I type transcription factor 33
STRINGAES695380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-105WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]