PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26872.7 Da PI: 5.9702 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 57 | 98 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 + y+GVr + +Wv+e r+p +k+++++lg+f tae+Aa+a+ Tp57577_TGAC_v2_mRNA25919 57 PVYRGVRKRN-LDKWVCEMREP---NKKTKIWLGTFPTAEMAARAH 98 68*****888.8******9998...347****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-9 | 57 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-14 | 58 | 122 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-22 | 58 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-11 | 58 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.371 | 58 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-8 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.07E-19 | 59 | 123 | No hit | No description |
PRINTS | PR00367 | 7.7E-8 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MFNTNNTFSS HPSTSDTSLP NSEGSYGTLV TNDEVRLAVS TPKKRAGRKK FKETRHPVYR 60 GVRKRNLDKW VCEMREPNKK TKIWLGTFPT AEMAARAHXX XXXXXXXXXX XXGRYACLNF 120 ADSAWRLPKP ATTQAKDIQK AAALAAEAFR PDKTLKTNDI EMDVITNNIE MDVGSSATEE 180 QSMVCMEEHE EGVMNMPEYF RDMALMSPTY SFGYHGYEDI HVEDFQDEEV SLWNF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25919 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC997200 | 5e-75 | KC997200.1 Medicago truncatula genotype F83005-5 C-repeat binding factor 14 (CBF14) gene, complete cds. | |||
GenBank | KC997201 | 5e-75 | KC997201.1 Medicago truncatula genotype DZA045-5 C-repeat binding factor 14-like (CBF14) gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452572.2 | 1e-104 | dehydration-responsive element-binding protein 1E | ||||
Refseq | XP_013452583.1 | 1e-105 | dehydration-responsive element-binding protein 1A | ||||
Refseq | XP_024641369.1 | 1e-104 | dehydration-responsive element-binding protein 1E | ||||
Refseq | XP_024641370.1 | 1e-104 | dehydration-responsive element-binding protein 1E | ||||
Refseq | XP_024641371.1 | 1e-104 | dehydration-responsive element-binding protein 1E | ||||
Refseq | XP_024641372.1 | 1e-104 | dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A2Z6PQ11 | 1e-132 | A0A2Z6PQ11_TRISU; Uncharacterized protein | ||||
STRING | GLYMA09G27180.2 | 1e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 4e-54 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25919 |