PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25821
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 320aa    MW: 36871.7 Da    PI: 8.4482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25821genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.3e-23210265258
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                +DgynW++Y  K  kgse+ rsYY+C  ++C vkk+ver+  d++++e+ Y+g+Hnh
  Tp57577_TGAC_v2_mRNA25821 210 NDGYNWKRYEEKFAKGSENQRSYYKCVGSNCVVKKRVERNI-DGEIIETLYKGTHNH 265
                                8****************************************.*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-20196268IPR003657WRKY domain
SuperFamilySSF1182908.11E-19206268IPR003657WRKY domain
PROSITE profilePS5081119.611209268IPR003657WRKY domain
SMARTSM007741.3E-19209267IPR003657WRKY domain
PfamPF031063.7E-18210265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005794Cellular ComponentGolgi apparatus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPIRIPNRLI QKKLWRILGF FSSIIGLISY AISSSFNQLF GNWNFIKIII YTVVSFSITS  60
MMLFLEKWKL SRRFLLKAHL GVLVLLLTSF YSFVSDYKTL NQKPDLFSLI SCSSFALMCF  120
CLSRQIDLGF ESDLLNFFLG MLTIHLMKIN LMLSIIAAIF CYSLMVLRSK LDSRHEIGTL  180
RVEDDVAIEI DAVDRNKNEF QSLRRRMNNN DGYNWKRYEE KFAKGSENQR SYYKCVGSNC  240
VVKKRVERNI DGEIIETLYK GTHNHCMPTE STMKKNSSSE YLYSLLPSET GSIDFPDQSF  300
GSEQLDSDEE LSNFSVVSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-142102681574WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25821
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615935.10.0uncharacterized protein LOC11415730
TrEMBLG7IXC70.0G7IXC7_MEDTR; WRKY family transcription factor
STRINGAES699030.0(Medicago truncatula)
STRINGAES988930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147431012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-21WRKY DNA-binding protein 33