PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25779
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 566aa    MW: 64378.7 Da    PI: 6.4646
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25779genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.16.4e-3046129186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+  +r+++lk+plWeevs+k+ e g++rs+k+Ckek+en+ k++k++keg++++t+++  t+++fdq
  Tp57577_TGAC_v2_mRNA25779  46 RWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKTEGK--TYRFFDQ 127
                                8********************************************************************986665..5****** PP

                   trihelix  85 le 86 
                                l+
  Tp57577_TGAC_v2_mRNA25779 128 LQ 129
                                98 PP
2trihelix102.33.7e-32373458187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k+ev+aLi++r+++e +++++  k+plWe++s+ m++ g++r++k+Ckekwen+nk+ykk+ke++k+r  ++s+tcpyfd+
  Tp57577_TGAC_v2_mRNA25779 373 RWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQR-RDDSKTCPYFDE 455
                                8*********************************************************************8.78899******* PP

                   trihelix  85 lea 87 
                                lea
  Tp57577_TGAC_v2_mRNA25779 456 LEA 458
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.009443105IPR001005SANT/Myb domain
PfamPF138377.7E-1945131No hitNo description
CDDcd122033.15E-2345110No hitNo description
PROSITE profilePS500906.9845103IPR017877Myb-like domain
SMARTSM007171370432IPR001005SANT/Myb domain
CDDcd122032.58E-27372437No hitNo description
PROSITE profilePS500906.876372430IPR017877Myb-like domain
PfamPF138371.7E-22373459No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDISTGENIV PSVVVQNGAN GGHEEKESEI IEEDDKINMN GGGGNRWPRQ ETLALLKIRS  60
DMDGVFRDSS LKGPLWEEVS RKLGELGYHR SSKKCKEKFE NVYKYHKRTK EGRSGKTEGK  120
TYRFFDQLQA LEKQFTLSSY SPKPQSNNNH TSSLPTTKPN ETINPISHVT NTTIPSTNPT  180
ALVFPSPPSA NTTTNPNHNN NVPYSLPNMN NLFSNTPTST SSSTASDEDL EEKYRKKRKW  240
KDYFRRLTRQ VLAKQDEMQK KFLEAIDKRE KEHLAQQDAL RIQEINRINK EHELLVQERS  300
SAAQKNAAII AFLQKLSGQP PPPPPPPTVP EMSPVPISQV QTQQLVIPNN NIVEIKNMNN  360
GHKSDCGVAS PSRWPKSEVH ALIRIRTSLE PKYQENGPKA PLWEDISAGM KKLGYNRNAK  420
RCKEKWENIN KYYKKMKESN KQRRDDSKTC PYFDELEALY KEKNKLQNPF GSNSFHSIKS  480
SEMMEPLMVQ PEQQWRPPTQ DEEANVVKKN LNEAKEDEDD GDVDDEDENM DEYEDGDSME  540
EDEGGVSSRF EVVTTNKLSS MDTVG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25779
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2255460.0AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592112.10.0trihelix transcription factor GT-2
SwissprotQ391171e-141TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2Z6LL410.0A0A2Z6LL41_TRISU; Uncharacterized protein
STRINGAES623630.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-137Trihelix family protein