PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25927 Da PI: 7.8607 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs+ L+ H++ H Tp57577_TGAC_v2_mRNA25751 85 YSCQLCNKVFSSIKALNGHMKWH 107 99*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.69E-9 | 48 | 108 | No hit | No description |
Pfam | PF13912 | 3.4E-10 | 52 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 52 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.6E-5 | 83 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.928 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-9 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MPCSIHLITL TTSTMKKSSS SSSCSSSSSS SPVENDHDHA LANVKQQGSN NHKCDLCNRV 60 FTSGNALGGH KTAHRSHIFP TKKRYSCQLC NKVFSSIKAL NGHMKWHSPK GSNGVVSSSL 120 EQTSNCDGQE TPAIDLSTYL PPILYRTKKR GRKIINDHEA VTPAPILLIN DHEAVTASQI 180 LFDMSHSRVV YRGEFIDFDV DRSAEKRLKL STNVDDTEKL DNVSEIDKPE VNDDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25751 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3PH06 | 1e-159 | A0A2K3PH06_TRIPR; Zinc finger protein ZAT10-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15177 | 3 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 1e-10 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25751 |