PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G61470.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 304aa    MW: 34350.1 Da    PI: 5.4966
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G61470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000131131323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ C+ksFs+   L  H+r H
  AT5G61470.1 11 CQVCKKSFSNGKALGGHMRAH 31
                 *******************98 PP
2zf-C2H211.50.00093274296123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C++C+++F +   L  H + H
  AT5G61470.1 274 YECQICNRMFASGQALGGHKKIH 296
                  99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-5733No hitNo description
PROSITE profilePS501579.66932IPR007087Zinc finger, C2H2
SMARTSM003550.43931IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-81031IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-41132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-8228296No hitNo description
PfamPF139128.0E-10228251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951228255IPR007087Zinc finger, C2H2
SMARTSM003550.31228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
PfamPF139121.6E-9274296IPR007087Zinc finger, C2H2
SMARTSM003550.055274296IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF  60
RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV VDLEEENSIE SESDITIEES  120
ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE  180
DNEDDDVKSL TSDVENLIGD SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY  240
QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL  300
APAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.86310.0silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306975370.0
Genevisible247526_at0.0
Expression AtlasAT5G61470-
AtGenExpressAT5G61470-
ATTED-IIAT5G61470-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G61470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G61470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168870.0AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200955.10.0C2H2-like zinc finger protein
TrEMBLQ9FII60.0Q9FII6_ARATH; C2H2-like zinc finger protein
STRINGAT5G61470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Jiao Y, et al.
    A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
    Plant Physiol., 2003. 133(4): p. 1480-93
    [PMID:14605227]
  4. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]