PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2552
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 347aa    MW: 38530.6 Da    PI: 7.499
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2552genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1048.9e-332477255
                   G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                              prlrWtpeLH++Fv+a++ LGG++kAtPk +l+lm++kgLt++hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA2552 24 PRLRWTPELHRCFVNAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRT 77
                              8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-312081IPR009057Homeodomain-like
PROSITE profilePS512949.4682080IPR017930Myb domain
SuperFamilySSF466893.94E-152279IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-242477IPR006447Myb domain, plants
PfamPF002492.1E-82576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSCGRDCG GSGGVRPYIR SKVPRLRWTP ELHRCFVNAI QTLGGHHKAT PKLVLQLMDI  60
KGLTISHVKS HLQMYRTMRS EVGKQGRPSN QHKNQGFEEH DDGCVDEVND VSVEHSLRRE  120
SDSSNFSKRA RIERGSCTTT NLQQCSQRRI CDDAVKNPLY CFYDYVPQPN NTSTNTNTMG  180
SEHDDEHKNK GVKDDEKEFC GWQRKQIQPP KSSDFCINLT SFKSLNQQSD FPQDSNVNDR  240
NTPSWAINGL TKTDRAHVEV EGEGGHELSL SLTLQNPSPQ TSNVSYSASE ISEAISCYPS  300
PPPHPNPTAL GLGGFSSYYK DCSRASSSST VKERINLDLS LAIYGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-202579458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2552
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470305.11e-160uncharacterized protein LOC25485600
TrEMBLA0A2Z6MP270.0A0A2Z6MP27_TRISU; Uncharacterized protein
STRINGXP_004497172.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-33G2-like family protein