PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25099
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 306aa    MW: 34409.3 Da    PI: 5.0413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25099genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-14114158347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT++E+ l++++ +++G  +Wk I++ +  +Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA25099 114 PWTEDEHRLFLQGLNKHGRARWKDISKDFLPRRTPTQIASHAQKY 158
                                8*****************99********999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.667107163IPR017930Myb domain
SuperFamilySSF466897.18E-17109164IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-15110161IPR006447Myb domain, plants
SMARTSM007171.9E-9111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-12112160IPR009057Homeodomain-like
PfamPF002497.7E-12114158IPR001005SANT/Myb domain
CDDcd001677.77E-11114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQKNSEINLN EPASIQEPSE NNSMEQQQKE NLDNIDVAES GSNAIVVNSN ANNGLIQDQL  60
LPEENQAVAN NGIIQAEPLP EENQAVANNG INHAEPLPEE NQAVANRERK ERIPWTEDEH  120
RLFLQGLNKH GRARWKDISK DFLPRRTPTQ IASHAQKYFK HLKEVAGKER KKRRSIHDVT  180
VDNNVTVASY PIEQQTGIPS IEQQNEIPHL IGPSIDEQPI PSIEGQNKIS PLVTHPVEKQ  240
NENISPHSTT LNDNNIENLV TPPIEPFKEK ESQLKLGYTF TVEITPQNMK NVLKVCELLE  300
KNLKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3MA351e-114A0A2K3MA35_TRIPR; Transcription factor DIVARICATA-like protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-27Homeodomain-like transcriptional regulator