PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GATA | ||||||||
Protein Properties | Length: 263aa MW: 29062.4 Da PI: 4.9755 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 32.3 | 1.4e-10 | 32 | 66 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + +Rrgpdg k LCnaCGl++ ++g+ Tp57577_TGAC_v2_mRNA24971 32 CQHCLFNENNVMRRGPDGRKNLCNACGLFWTRTGK 66 99999999999*******************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.7E-5 | 26 | 77 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.01E-9 | 31 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.9E-10 | 31 | 71 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 3.61E-8 | 31 | 74 | No hit | No description |
PROSITE profile | PS50114 | 9.302 | 32 | 74 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-8 | 32 | 66 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF05627 | 2.1E-15 | 159 | 194 | IPR008700 | RIN4, pathogenic type III effector avirulence factor Avr cleavage site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKRKGRNNIL LREKNGQFKF LKQSCDPYLC ICQHCLFNEN NVMRRGPDGR KNLCNACGLF 60 WTRTGKLKDL SLSKGRGNLS IDQSDLDPLI DVNVTVLEGE FPVIQNEQGI SEDPSKAIAA 120 EGSNNHALYT RDEELPESLE HLTNTLGIDH SSENDDEQDK GRLLPKFSER DVKDPSSAEG 180 FTVIFNEARD EKKTGSNPES PGKTATEPHN KPPLDPGKPQ SPMKSFTFSE TSVTIESLLS 240 FLDKDIPSTS EVDHTSVVGV SQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24971 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148061 | 4e-45 | BT148061.1 Medicago truncatula clone JCVI-FLMt-5D11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501662.1 | 1e-49 | GATA transcription factor 24-like isoform X1 | ||||
TrEMBL | A0A2K3MP93 | 1e-180 | A0A2K3MP93_TRIPR; GATA transcription factor 24-like protein (Fragment) | ||||
STRING | XP_004501662.1 | 5e-49 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 3e-11 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24971 |