PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24719
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 286aa    MW: 31345.1 Da    PI: 7.0361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24719genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.48.9e-201863147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W++eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  Tp57577_TGAC_v2_mRNA24719 18 KGPWSPEEDEALQKLVERHGPRNWSLISRAIP-GRSGKSCRLRWCNQ 63
                               79******************************.***********985 PP
2Myb_DNA-binding56.85.2e-1872114347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++T+eEd l+++a++q+G++ W+tIar +  gRt++ +k++w++ 
  Tp57577_TGAC_v2_mRNA24719  72 AFTPEEDNLIIRAHAQFGNK-WATIARLLS-GRTDNAIKNHWNST 114
                                79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.6751368IPR017930Myb domain
SuperFamilySSF466891.27E-3215111IPR009057Homeodomain-like
SMARTSM007171.7E-171766IPR001005SANT/Myb domain
PfamPF002499.3E-191863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-261971IPR009057Homeodomain-like
CDDcd001671.10E-162062No hitNo description
SMARTSM007173.0E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129421.84470119IPR017930Myb domain
CDDcd001676.55E-1372115No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2372118IPR009057Homeodomain-like
PfamPF002494.6E-1572114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNNNNNNNHN RKDMDRIKGP WSPEEDEALQ KLVERHGPRN WSLISRAIPG RSGKSCRLRW  60
CNQLSPQVEH RAFTPEEDNL IIRAHAQFGN KWATIARLLS GRTDNAIKNH WNSTLKRKCS  120
SFMNSDDPAF DPQPLKRSAS VGAPGSPSGS DLSDSGVQTV FRPVPIRLPV ERITTSEVAV  180
AEEEEEEDDG GPLTSLSLSL PGVESSDRSA AVAISVNPIT AVTASVAAKV GALNLSGEFM  240
AVMQEMIKNE VRSYMEERNN GMCFQGVDRL RNVSAKPIGI NRVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-40171193105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-391711857158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-391711857158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-40171193105C-Myb DNA-Binding Domain
1msf_C3e-40171193105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24719
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457460.11e-161transcription factor MYB44
SwissprotO231602e-86MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2K3LLV90.0A0A2K3LLV9_TRIPR; Transcription factor MYB 44-like protein
STRINGXP_007155887.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-71myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]