PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24662 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 492aa MW: 54841.7 Da PI: 4.9091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 296 | 342 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E++RR+++N ++ Lr+l+P++ +K++ a+++ A+eYI++L Tp57577_TGAC_v2_mRNA24662 296 TKHFATEKQRREQLNGKYKILRSLIPNP-----TKVDRASVVGDAIEYIREL 342 79**************************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-15 | 291 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.294 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-11 | 296 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-11 | 296 | 342 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-12 | 296 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-11 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MPMSSGSGDK QDMHDQTGCF DPNTMDEGIE NSQKDYNTNN NNINLEEDFK PSVEEELSYH 60 NPQHLEDVST YTNGFTPSPI DIEQQNLGLN IGGSYNNSSN NDMDNHLANE VYQNSTWDPS 120 VQDMDYINHQ EHHQLSEQQY QQFVETQNHN QSYNPSSILD PSYSSPDLLN LLRLPRCSAS 180 SLLTTPSNIC LTNPTQKAPN FHSSMSFLGD LPIGSSDNTS GSSVLYDPLF PLNLPPQPPA 240 LRELFQSLPN GYSMPTSSRN GSLFGGGDEM EGDGDMGVLE FNRVTASVGK GRGKATKHFA 300 TEKQRREQLN GKYKILRSLI PNPTKVDRAS VVGDAIEYIR ELIRTVNELK LLVEKKRHGR 360 DMCKRLKTED DAAESCNIKP FGDPDGNIRT SWLQRKSKDS EVDVRIIDDD VTIKLFQRRK 420 VNCLLFVSKV LDELQLELHH VAGGHVGEYC SFLFNSKVTE GSSVYASAIA NRVIDVLDTQ 480 YAAGVPHTSR L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24662 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457399.1 | 0.0 | transcription factor bHLH91 | ||||
TrEMBL | A0A2K3PLJ2 | 0.0 | A0A2K3PLJ2_TRIPR; Transcription factor bHLH91-like protein | ||||
STRING | AES85444 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 4e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24662 |