PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G31220.1
Common NameBHLH10, EN23, F16D14.6
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 458aa    MW: 51458.6 Da    PI: 5.0556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G31220.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11251292854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er RR + N++f+ L+ l+P++     +K + a+i+ +A++YIk+L
  AT2G31220.1 251 TERERRVHFNDRFFDLKNLIPNP-----TKIDRASIVGEAIDYIKEL 292
                  6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.68E-11241297No hitNo description
Gene3DG3DSA:4.10.280.104.9E-13241303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.5E-14242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.167243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9251292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEEERESLYE EMGCFDPNTP AEVTVESSFS QAEPPPPPPQ VLVAGSTSNS NCSVEVEELS  60
EFHLSPQDCP QASSTPLQFH INPPPPPPPP CDQLHNNLIH QMASHQQQHS NWDNGYQDFV  120
NLGPNSATTP DLLSLLHLPR CSLPPNHHPS SMLPTSFSDI MSSSSAAAVM YDPLFHLNFP  180
MQPRDQNQLR NGSCLLGVED QIQMDANGGM NVLYFEGANN NNGGFENEIL EFNNGVTRKG  240
RGSRKSRTSP TERERRVHFN DRFFDLKNLI PNPTKIDRAS IVGEAIDYIK ELLRTIEEFK  300
MLVEKKRCGR FRSKKRARVG EGGGGEDQEE EEDTVNYKPQ SEVDQSCFNK NNNNSLRCSW  360
LKRKSKVTEV DVRIIDDEVT IKLVQKKKIN CLLFTTKVLD QLQLDLHHVA GGQIGEHYSF  420
LFNTKICEGS CVYASGIADT LMEVVEKQYM EAVPSNGY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT2G31220
AtGenExpressAT2G31220
Function -- GeneRIF ? help Back to Top
  1. bHLH010, bHLH089 and bHLH091 together are important for the normal transcriptome of the developing Arabidopsis anther, possibly by forming a feed-forward loop with DYT1.
    [PMID: 26216374]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G31220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT4G21330
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G31220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180680.20.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A178VNK30.0A0A178VNK3_ARATH; Uncharacterized protein
STRINGAT2G31220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Representative plantOGRP26591431
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  6. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  7. Feng B, et al.
    Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development.
    Plant J., 2012. 72(4): p. 612-24
    [PMID:22775442]
  8. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  9. Zhu E, et al.
    The DYT1-interacting proteins bHLH010, bHLH089 and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome.
    Plant J., 2015. 83(6): p. 976-90
    [PMID:26216374]
  10. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  11. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]