PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24482

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 285aa MW: 30923.4 Da PI: 5.8383

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24482	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.7e-33	53	107	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Tp57577_TGAC_v2_mRNA24482 53 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 107 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.06	50	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-32	53	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	53	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-26	53	108	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	55	106	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-24	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MYHAKKFPEA TMMPHKSQGG GAEQLANVGV LSGSAVKNVA PAPAPAPSGG GGKQRLRWTS 60 DLHDRFVDAI TQLGGPDRAT PKGVLRVMGV PGLTIYHVKS HLQKYRLAKY LPESPADDSK 120 DEKRNSGDSI SGADSSPGLQ INDALRMQME VQKRLHEQLE VQKQLQMRIE AQGKYLQKII 180 EEQQKLGGTL AASETLPLPH DKHNHTQSEP SGSSDALAGT FSPLKKQRID EGPKDGFTAS 240 QVTRESAEKN DCNVGRLDPN LYEDDDAGFG FDLETENDDN NESE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-24	52	110	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24482

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ007311	1e-165	HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493285.1	1e-178	myb family transcription factor PHL7-like isoform X1
TrEMBL	A0A2Z6MY34	1e-180	A0A2Z6MY34_TRISU; Uncharacterized protein
STRING	XP_004493285.1	1e-177	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24482