PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23918
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 328aa    MW: 36915.3 Da    PI: 7.4497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23918genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-08269322348
                                SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqkyl 48 
                                 WT+eE++ l+++v ++ ++     Wk I +        +Rt+ ++k++w++++
  Tp57577_TGAC_v2_mRNA23918 269 FWTAEEEKALKEGVSKFATEnqniPWKQILEFGCrvfdSTRTPGDLKDKWRNLM 322
                                5****************************9987799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.109.1E-1034100IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.22E-93597IPR011011Zinc finger, FYVE/PHD-type
CDDcd154894.37E-54489No hitNo description
SMARTSM002498.5E-64490IPR001965Zinc finger, PHD-type
PROSITE patternPS0135904589IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466893.14E-10264323IPR009057Homeodomain-like
SMARTSM007175.2E-5266324IPR001005SANT/Myb domain
CDDcd116603.22E-14270323No hitNo description
Gene3DG3DSA:1.10.10.608.8E-9270323IPR009057Homeodomain-like
PfamPF002497.9E-6270321IPR001005SANT/Myb domain
PROSITE profilePS500907.329270322IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLLMRIQHDN DNATVYNSID NHTDAPIPDF VPDTDTEDSL DDKSCITCKT AGGALLVCTQ  60
TDCHIAVHYN CIGSEPNFND SGNFFCPYCS YKRALKKTRE LREIAVRAKN VLSSFLDKGQ  120
TVLKDNQNRP IKPVKLEPLQ DQPVKPELVQ HHVNQNEHEQ EVSEKGKEHN DNDNDKDKGE  180
VSLSESSVSE STKDSDSSFC ISVKKGRTNA KRKVAPVKKS LLPERKAAGA DAAGDDGEEE  240
EVTSSRRTTS RQKQVKKQKL FTVRRRNLFW TAEEEKALKE GVSKFATENQ NIPWKQILEF  300
GCRVFDSTRT PGDLKDKWRN LMKEGSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601481.21e-106uncharacterized protein LOC11429054
TrEMBLA0A2K3P1L00.0A0A2K3P1L0_TRIPR; Uncharacterized protein
STRINGAES717321e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-07MYB_related family protein