PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 327aa MW: 36861.2 Da PI: 7.1687 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.3e-08 | 269 | 322 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqkyl 48 WT+eE++ l+++v ++ ++ Wk I + +Rt+ ++k++w++++ Tp57577_TGAC_v2_mRNA23917 269 FWTAEEEKALKEGVSKFATEnqniPWKQILEFGCrvfdSTRTPGDLKDKWRNLM 322 5****************************9987799****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 9.0E-10 | 34 | 100 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.22E-9 | 35 | 97 | IPR011011 | Zinc finger, FYVE/PHD-type |
CDD | cd15489 | 4.34E-5 | 44 | 89 | No hit | No description |
SMART | SM00249 | 8.5E-6 | 44 | 90 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 45 | 89 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF46689 | 2.62E-10 | 264 | 323 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-5 | 266 | 324 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-6 | 270 | 321 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.64E-14 | 270 | 323 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-9 | 270 | 323 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.329 | 270 | 322 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MLLMRIQHDN DNATVYNSID NHTDAPIPDF VPDTDTEDSL DDKSCITCKT AGGALLVCTQ 60 TDCHIAVHYN CIGSEPNFND SGNFFCPYCS YKRALKKTRE LREIAVRAKN VLSSFLDKGQ 120 TVLKDNQNRP IKPVKLEPLQ DQPVKPELVQ HHVNQNEHEQ EVSEKGKEHN DNDNDKDKGE 180 VSLSESSVSE STKDSDSSFC ISVKKGRTNA KRKVAPVKKS LLPERKAAGA DAAGDDGEEE 240 EVTSSRRTTS RQKQVKKQKL FTVRRRNLFW TAEEEKALKE GVSKFATENQ NIPWKQILEF 300 GCRVFDSTRT PGDLKDKWRN LMKEAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23917 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003601481.2 | 1e-105 | uncharacterized protein LOC11429054 | ||||
TrEMBL | A0A2K3P1L0 | 0.0 | A0A2K3P1L0_TRIPR; Uncharacterized protein | ||||
STRING | AES71732 | 1e-104 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 7e-07 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23917 |