PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23761
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 318aa    MW: 36868.9 Da    PI: 10.0175
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23761genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.9e-201764249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +i  ks  qvtfskRr g++KKA+EL++LC++e+ +++fs+ +k + +
  Tp57577_TGAC_v2_mRNA23761 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIGIVVFSPADKAFSF 64
                               57789999*********************************9886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-28867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.834868IPR002100Transcription factor, MADS-box
CDDcd002659.92E-30977No hitNo description
SuperFamilySSF554551.15E-25983IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221764IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLKKKSSLGR QKIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI GIVVFSPADK  60
AFSFGHPEVE SIIDRYLSRN PPQESSSNQI VEAHRNSNVR DLNMQLTQLL SHLEIEKKQG  120
EEIDHVRKAR QMQFWWEGPI DELGLNELLQ LKVSIEDLKK NLXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK KYSLKFQYNY  240
DIIVLFLIIH HSSKHRQMQF WWEGPIDELG LNELLQLKVS IEDLKKNLGK IASKCMMEKS  300
NMSSPNIGVN RFGRYGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-17993186Myocyte-specific enhancer factor 2A
3kov_B7e-17993186Myocyte-specific enhancer factor 2A
3kov_I7e-17993186Myocyte-specific enhancer factor 2A
3kov_J7e-17993186Myocyte-specific enhancer factor 2A
3p57_A7e-17993186Myocyte-specific enhancer factor 2A
3p57_B7e-17993186Myocyte-specific enhancer factor 2A
3p57_C7e-17993186Myocyte-specific enhancer factor 2A
3p57_D7e-17993186Myocyte-specific enhancer factor 2A
3p57_I7e-17993186Myocyte-specific enhancer factor 2A
3p57_J7e-17993186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6334491e-175CU633449.12 M.truncatula DNA sequence from clone MTH2-80I14 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601459.11e-106agamous-like MADS-box protein AGL61
TrEMBLA0A2K3P6851e-110A0A2K3P685_TRIPR; Agamous-like mads-box protein agl62-like
STRINGAES717101e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-56AGAMOUS-like 61