PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2376
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 284aa    MW: 30693.1 Da    PI: 6.3636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2376genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.22.3e-32101021100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++C +apyf  e+p++fanvh++FGasnv kllk+l+ ++reda++        r++dPvyG+vg+i+ lqq
  Tp57577_TGAC_v2_mRNA2376  10 PCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNATDREDAAE-------SRIKDPVYGCVGLISMLQQ 87 
                               7*******************************************************965.......5****************** PP

                    DUF260  86 qleqlkaelallkee 100
                               +l++ ++el+++k+e
  Tp57577_TGAC_v2_mRNA2376  88 RLKEIQHELHAAKKE 102
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1839103IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3210100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
LIQMSSSNSP CAACKYLRRK CTQECDFAPY FLPESPQRFA NVHRVFGASN VAKLLKELNA  60
TDREDAAESR IKDPVYGCVG LISMLQQRLK EIQHELHAAK KELSSYNLNP QTMQYLLAHP  120
GTVIMPQQQQ QWNNAQFAGF ANNFPPEIAG GGGIVIRDGQ QQQQDQEFME AHQLLAAQQQ  180
YMLRYGGGHQ MGGAAVSDVA DGGQSLGMGN FDNGAGGGGG GAVGYYQIQQ QGGGEQQQQN  240
YHHHNVSVPA AHGNPIEAQL LLSPQNQETG EDGKSVGSTH HSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3971068114LOB family transfactor Ramosa2.1
5ly0_B4e-3971068114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459745.11e-112protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2K3NG891e-172A0A2K3NG89_TRIPR; LOB domain-containing protein 36-like
STRINGXP_004500020.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-50ASYMMETRIC LEAVES 2-like 1