PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23673
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 250aa    MW: 28719.7 Da    PI: 9.9148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23673genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014971123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ F++   L  H++ H
  Tp57577_TGAC_v2_mRNA23673 49 YSCNFCKREFRSAQALGGHMNIH 71
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-64676No hitNo description
PfamPF139126.4E-64972IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1774976IPR007087Zinc finger, C2H2
SMARTSM003550.0084971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEGFHSNQYW LWMKRRQVET PIESWEEKAF AEDAARNILN GSIWPPRFYS CNFCKREFRS  60
AQALGGHMNI HRRDRARLKQ NLSPHNEIQK NDDFKFSTNS SLGNNYFSAK VSSQFKPCSR  120
RRSLSPSRMI STIVNAREEN FKDCVETSLS LGLGLTSMFA QKSSTILLGS LGERQKQHHI  180
SCEEKGMISC KRLKTNNISS LPSVFLKTCS NDHHRFMDFQ PTEIVLGVNH GMEDLDLELR  240
LGKQQKVIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-124471229superman protein
2l1o_A6e-124471229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541911e-103CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616466.21e-121probable transcriptional regulator RABBIT EARS
TrEMBLA0A2Z6P4091e-144A0A2Z6P409_TRISU; Uncharacterized protein
STRINGAES994241e-114(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-26C2H2 family protein