PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23462
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 771aa    MW: 84184.2 Da    PI: 5.7969
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23462genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.9e-13258319263
                                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                ++ kr  r+++NRe+A+ sRqRKk ++eeLeekv ++ +   +L +++     e a+l++++
  Tp57577_TGAC_v2_mRNA23462 258 EDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTIADLSSKITYVMAENATLRQQL 319
                                6789***********************************************99999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16257321IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53259319IPR004827Basic-leucine zipper domain
PfamPF001708.6E-12260319IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-17261320No hitNo description
SuperFamilySSF579596.0E-12261319No hitNo description
CDDcd147042.94E-21262313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MADQILSDQP PEQQPSSDLD YDFADQFNNV PIPSLDFLFN DDLGDLEITF DDLDNLCIPS  60
DTEEFLLPDS WNPNGVPISP IIDNEGVVNF DSPESGASVV SGDLSPDVSR FLNSDSVSAD  120
DNDNSVDVDV KVSMETENAE NSDREESSNG PVSSQGSGNG GSGVYEATNS PSHDSGRYER  180
DISSSHEHAI VEEGVKLEGI VKGCDLKRKK ESSHESAETR TPKCSRRSSS MEIKTQQQQQ  240
QQQAQSQSQS GFDGIEDEDE KRKARLMRNR ESAQLSRQRK KHYVEELEEK VRSMHSTIAD  300
LSSKITYVMA ENATLRQQLS GGVMCPPPPP GAGMYPHPPM GPMPYPWMPC APYVVKPQGS  360
QVPLVPIPRL KPQQPAASSK SKKGESKKSE SKKTEVKTKK VASISLLGLF LCIMLFGGLV  420
PMVDFKFGGL VDNVSGRSSY VSDRWFYGHG GGKIWPVNGH MNESGRDGEV GFPNGRFGIS  480
DRNNYERGRK LEEMNERKDS SCVGHRDNAS EPLLASLYVP RNDKLVKIDG NLIIHSIMAS  540
EKAMASQDAQ VKKEKSGTGL AIPKDWDSAL AIPEVGRNRG QHPNVYRVSA EQRRAIGSGS  600
TKTLKDHMKS SATDGKMQQW FREGIAGPML SSGMCTEVFQ FDVSPAPGAI VPATAVGNIS  660
TETRRNATNV NKSRNRRILH TLPDQLPGTR LNITEEHARN LPKDHLPGNK SSMVVSVLVD  720
PKEAGDSGVD GMMAPKSLSR IFVVVLIDSV KYVTYSCGLP RASPLVTAYV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664676RNATNVNKSRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1833710.0AC183371.2 Medicago truncatula chromosome 7 clone mth2-9g15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493333.10.0bZIP transcription factor 17
TrEMBLA0A2K3NPR10.0A0A2K3NPR1_TRIPR; BZIP transcription factor
STRINGXP_004493333.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74873448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-145bZIP family protein