PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23200
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 330aa    MW: 37171.1 Da    PI: 7.1189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23200genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12155201354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r h ++Er+RR+++ ++f  L ++lP +     kK++Ka+iLe A+ ++k L
  Tp57577_TGAC_v2_mRNA23200 155 RDHVMAERKRREKLSQRFIALSSILPGL-----KKMDKATILEDAISHLKAL 201
                                5699************************.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.72152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15156215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9156201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-11157206No hitNo description
SuperFamilySSF474591.44E-15157219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MIQISSTNYM PQLLGMEDAL FNDHDYPMDS FAFEYDDMAY FKSFSESPPE SSYSSPNNNH  60
KRFHSESTQN SSFPIHSSPD QSVASATPPT KLLKASPKII SFDHSDTSSA RQFYDVDAKV  120
KKPKAEIEYG ENLNFAALIS QGENKVANRN PIQARDHVMA ERKRREKLSQ RFIALSSILP  180
GLKKMDKATI LEDAISHLKA LNERVKNLEE QVADKKVESA VFVKRSIIFA DDDSSSCDEN  240
SDQPLPKIEA RVSGKDMLIR IHCNKNTGRT ATTILNELEK HHLTVQSSSI LPFGNNYLDI  300
TIIAQMNKEY CLTIKELIRS ISHVLRKLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608591.10.0transcription factor bHLH19
TrEMBLA0A2K3LHQ70.0A0A2K3LHQ7_TRIPR; Transcription factor bHLH25-like protein (Fragment)
STRINGAES907880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-49bHLH family protein